Who’s duping whom?

Today in the Chronicle of Higher Education there’s a piece on Gerald Schatten’s role in the Korean stem cell mess. It’s an interesting piece, written without Dr. Schatten’s participation — he’s keeping quiet while the University of Pittsburgh conducts its investigation of him. (Worth noting, from the article: “Pittsburgh began investigating Mr. Schatten, at his own request, with a six-person panel that first met on December 14.”)

Given Schatten’s non-participation in the article, the portrait of him that emerges turns on the impressions of his friends and acquaintances, past collaborators and competitors. We can only guess at what might have been going on inside Schatten’s mind at crucial points as events unfolded. But perhaps, at least for the purposes of trying to spare other scientists from the professional horrors to which Schatten now finds himself subjected, it would be useful to identify some questions Schatten ought to have asked himself. After all, if we didn’t think we could learn something from experience, what the heck are we doing science for?

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Friday Sprog Blogging: why we love science!

Elder offspring (age 6.5): I can’t wait for Friday! We get to do science in school!
Younger offspring (age 4.5): We do nature study every day.
Dr. Free-Ride: That’s because you don’t have standardized tests yet, or the science would get crowded out by all the other stuff on the test.
Elder offspring: We’re learning about the life-cycles of different animals. And, we have two bearded dragons in our science classroom.
Younger offspring: We’re learning about marine mammals, but Aidan C. and I call them “gaREEN mammals”.
Dr. Free-Ride: Green mammals? You two are silly, aren’t you. Hmm … are there any green mammals?
Dr. Free-Ride’s better half: Sloths.
Dr. Free-Ride: Sloths?
Dr. Free-Ride’s better half: Sloths. An algae grows on them* and helps them blend in with leaves.
Dr. Free-Ride: Cool! Like what happened to the polar bears at the zoo when there was algae growing in their hair shafts.
Younger offspring: What other color mammals are there?
Dr. Free-Ride: When you guys were babies I fed you lots of carrots to see if I could make you orange mammals.
Elder offspring: Did it work?
Dr. Free-Ride: It did not. Is there no mammal that I can turn orange by feeding it lots of carrots?
Younger offspring: Not one that you can turn orange.

Taking it personally

Today I had my first (non-virtual) class meetings of the spring semester. There’s nothing like having every available seat filled and then having folks stream in to sit on the floor to make an academic feel popular. (Of course, in the past, a significant portion of those who have gotten add-codes have then disappeared until the midterm, after which most of those disappeared for good. But right now I’m popular!)
When it came time to give “the talk” about academic integrity, I was less dispassionate than I have been in years past. It’s no secret that I think plagiarism is lame. But, in the vain hope that it might make a difference — that this might be the term with no instances of plagiarism — I decided to lay it on the line. Here’s a close approximation of what I told my classes:

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Coming soon: a new edition of Tangled Bank

In one short week (on February 1, 2006), there will be a new edition of the Tangled Bank, hosted here at Adventures in Ethics and Science.
Tangled Bank is a blog carnival of the best science writing (broadly construed) in the blogosphere. In previous editions, topics have ranged across many scientific disciplines and have included essays about the intersections of science and everyday life. The important criteria for submissions are that they be about science, nature or medicine, and that they have been published within the past two or three months on a blog.
Following the example of GrrlScientist, I would like to encourage submissions by new voices — especially bloggers from outside the U.S., women, and folks whose writing hasn’t been featured by the Tangled Bank before. And, I’d like to put out a special call for submissions in some of the areas of science that are underrepresented here at ScienceBlogs. If you’re blogging about chemistry, or astronomy, or meteorology, or [whatever scientific field we’re not presenting here], you’re on notice!
You can send your submissions to me, to PZ Myers, or to the Tangled Bank host inbox (host@tangledbank.net). Please:

  • Put “Tangled Bank” in the subject line.
  • Include a link to the essay you’re submitting
  • If you can, include a brief description of the essay
  • Indicate whether you are the author of the essay or you are informing on another great science writer in the blogosphere (which is encouraged!)
  • Note whether you (or the author of the essay who you’re ratting out) are (is) a first-time contributor to Tangled Bank.

I anxiously await your submissions!

Not on my watch, or it’s not my job to watch?

Via Evolgen, an article by Nicholas Wade on tools to recognize doctored images that accompany scientific manuscripts. Perhaps because “seeing is believing,” pictures (including visual presentations of data) have been a favored weapon in the scientist’s persuasive arsenal. But this means, as we know, that just as images can persuade, they can also deceive.
The deceptions Wade discusses in the linked article rely primarily on using Photoshop to cover up inconvenient features (like bands on gels), to resize isolated parts of images, to rotate things, and the like. Wade writes:

At The Journal of Cell Biology, the test has revealed extensive manipulation of photos. Since 2002, when the test was put in place, 25 percent of all accepted manuscripts have had one or more illustrations that were manipulated in ways that violate the journal’s guidelines, said Michael Rossner of Rockefeller University, the executive editor. The editor of the journal, Ira Mellman of Yale, said that most cases were resolved when the authors provided originals. “In 1 percent of the cases we find authors have engaged in fraud,” he said.

(Emphasis added.)
Notice that while most of the manipulations were not judged to be fraud, there was a fairly high proportion — a quarter of the accepted manuscripts that had illustrations — that violated JCB guidelines.
Possibly this just means that the “Instructions to Authors” aren’t carefully read by authors. But it seems likely that this is also indicative of a tendency to cherry-pick images to make one’s scientific case in a manner that would seem pretty darn sneaky were it applied to data. You can’t just base your analysis on the prettiest data; why should you get to support your scientific claims with the prettiest available images?
RPM has a lovely discussion of this, including the phenomenon of “picture selection”. And the Wade article gives a nice feel for how the mathematical features of digital images can make alterations that aren’t detectable by the naked eye as altered quite easy to find with the right algorithms. Either this kind of image doctoring will get smacked down quicker than a student paper cut and paste from the internets … or the job opportunities for mathematicians in science labs may increase. (Knowing how the algorithms work may make it possible to find ways to defeat detection, too.)
But that’s not the part of the Wade article that got my dander up today. The bit I want to discuss (below the fold) is whose responsibility it is to catch the folks trying to lie with prettied-up images.

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Outsourcing research

Every now and then, I take a moment to read my unsolicited commercial email before binning it. (Note to eMarketers: This moment is generally used to mock and deride the goods and/or services offered in the unsolicited commercial email. Take me off your stupid mailing lists!) The other day, I came upon a message offering me a service that’s a new one to me: outsourcing research.
As a professional philosopher, I don’t have much call to outsource my research (which mostly consists of reading, thinking hard, pounding away at the keyboard, and swearing if MS Word crashes in the middle of a crucial sentence). But if I were trying to run a chemistry lab, the idea of outsourcing research might be very appealing.
And, it may surprise you to learn, I think there might even be positive effects for our body of scientific knowledge from trying something like this.

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Welcome Koufax voters!

I’m excited to be one of the many fine nominees for the “Best New Blog” Koufax Award for 2005. Because I know you want to make an informed decision about your vote (or, you know, put off doing actual work for a little while), here’s a quick tour of my posts back at the pre-ScienceBlogs location.
Also, let me point out that two of my sibling bloggers here (Aetiology and Living the Scientific Life) are also up for “Best New Blog” — as are a number of the blogs in my blogroll (right sidebar — you know you wouldn’t be here if you didn’t have a little time to procrastinate!). Holy vote-splitting, Batman!
Is it possible, given the plethora of good science blogs among this year’s Koufax nominees, for a science blog to beat out a garden-variety political blog for “Best New Blog”?
It might be if the ScienceBlogs readers remember to vote when voting opens!

Separation of Science and State?

Silly human nature, getting scientists into trouble. Until the robots are ready to take the reins of the scientific enterprise (and personally, I have my doubts that this is first item on the robots’ to-do list), we’re faced with the practical problem of figuring out how to keep human scientists honest. Among the broad strategies to accomplish this is reducing the potential payoff for dishonesty compared to honesty (where, as we know, doing honest science is generally more labor-intensive than just making stuff up).
I take it that this piece by David S. Oderberg is a variation on the theme. In the aftermath of the Hwang Woo-Suk stem cell fraud-o-rama, Oderberg suggests that the best way to save science from the “unholy lust” of its practitioners is to cut public funding for scientific research.

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Friday Sprog Blogging: scientific controversy at the breakfast table

(Based on actual events.)
Younger offspring (age 4.5): (singing softly to self while arranging a line of nine grapes on breakfast plate) Nine planets, fine planets, in our solar system. Nine planets, fine planets, go ahead and list ’em … *
Elder offspring (age 6.5): You know, in school we learned that they discovered a tenth planet. They used to call it planet X, but now they’re callin’ it Xena.
Younger offspring: (glowering at sibling and singing louder) NINE planets! FINE planets! In our sol-ar SYStem! NINE planets! FINE planets! Go ahead and LISTthem!
Dr. Free-Ride’s better half: (from the next room) Didn’t they decide Pluto is too small to be a real planet?
Dr. Free-Ride: Pluto is too a planet! It was a planet when I learned it in school, and it hasn’t gotten any smaller since then!
Younger offspring: Pluto is a planet. It’s in the song.
Elder offspring: Xena’s a planet, too.
Younger offspring: (glower set at full strength) Xena isn’t in the song.
Dr. Free-Ride: I think that song was written before they discovered Xena. (To the next room) And Pluto is definitely a planet!
Dr. Free-Ride’s better half: Your education is becoming obsolete. Remember the brontosaurus?
Dr. Free-Ride: Shut up! (To younger offspring) Eat your planets.
*The lyrics to the song were very similar — but not identical — to those of Nine Fine Planets by John Paul Taylor, Jr. If any of my readers is familiar with this variant — and can hook me up with the full lyrics — I’d be much obliged!

IRB shopping

Via Inside Higher Ed comes news that the Food and Drug Administration has changed its mind (do administrative bodies have “minds”?) about rules it recommended on how scientists get approval for their research projects from IRBs (institutional review boards). In particular, the rules were intended to head off abuses of the approval system that might come from “shopping around” for the IRB most likely to respond favorably to one’s research proposal. From the IHE article:

[The FDA] announced in the Federal Register that it would withdraw a 2002 plan that would have required scientists seeking approval for a particular piece of research to inform “institutional review boards” on their campuses of any previous attempts to gain that approval.
The FDA, which oversees significant amounts of federal research funds and regulates IRB’s, which are the campus panels charged with approving clinical trials involving human subjects, said it was considering the 2002 rules because of concerns raised in a 1998 report by the Department of Health and Human Services’s inspector general about what it called “IRB shopping.” The report suggested that in at least “a few” cases, researchers “who were unhappy with one IRB’s reviews [of their proposed study] switched to another without the new IRB being aware of the other’s prior involvement.” Many large universities and medical centers have multiple review boards.
FDA officials sought comments on a proposed change in the rules governing IRBs that would require researchers to include in their research proposals information about prior attempts to seek approval for the experiments. “These disclosures,” the FDA wrote at the time, “could help ensure that sponsors and clinical investigators who submit protocols to more than one IRB will not be able to ignore an unfavorable IRB review decision and that IRBs reviewing a protocol will be aware of what other IRBs reviewing similar protocols have concluded.”

What was the worry with “IRB shopping”, and why has the FDA decided to stop worrying about this?

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