Dealing with plagiarism once the horse is out of the barn.

Not quite a year ago, I wrote a pair of posts about allegations of widespread plagiarism in the engineering college at Ohio University. The allegations were brought by Thomas Matrka, who, while a student in the masters program in mechanical engineering at OU, was appalled to find obvious instances of plagiarism in a number of masters theses sitting on the library shelves — paragraphs, drawings, sometimes whole chapters that were nearly identical, with no attribution at all to indicate a common source.
Pretty appalling stuff. But back in November 2005, the OU administration didn’t seem to see it as a big problem — at least, not as of problem of the magnitude Mr. Matrka saw. But Mr. Matrka’s efforts have finally had some effects. Chickens are coming home to roost not only for the students who plagiarized in their theses, but for the faculty members who seemed willing to let this conduct slide.

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Things non-scientists can do to improve communication with scientists.

One of the things that happens when I lay out a problem (say, the difficulties for scientists in communicating with non-scientists about scientific matters) is that my excellent commenters remind me not to stop there. They press me for a solution.
I started, in my earlier post, to gesture toward an answer to the question of how to improve communication between scientists and non-scientists:

… because non-scientists count on scientists as a source of reliable knowledge on a whole range of issues, non-scientists have a stake in improving communication with scientists. This means part of the burden of improving this communication falls on the non-scientists. They have to listen to what the scientists are trying to explain. They have to ask questions when things aren’t clear. Perhaps, they even have to try asking questions of the sort science can answer, rather than the broad questions to which science can hardly ever provide a simple answer.
There’s still a lot of work for the scientists to do here. But the non-scientists have to start being active participants engaged in a dialogue rather than a passive “audience” waiting to have the relevant facts poured into their skulls.

But vague gesturing isn’t enough. So VisualFX presses me:

As an individual non-scientist, what can I do? What would you, as a scientist, like to see someone like me do?
Who am I? I am a non-scientist who has a keen interest in the scientific world. I am a computer graphics artist/3D animator/video editor/DVD author. I can do a lot with moving images using computer graphics technology. I have a keen interest in science and technology ever since I was a kid. I feel I have a decent understanding of science in general as a layperson. But, I am completely out of my league when it comes to actually being able to understand the vast majority of the scientific literature. I do read a lot of stuff in popular publications such as Scientific American and popular books such as by Brian Green and Richard Dawkins but, that is where it ends for me.
I may be pretty easy compared to the large majority of the population here in the US. I feel I do have a basic, albeit, incomplete understanding of how science works, what scientists do, what constitutes a scientific theory, etc (thanks in no small part to Sb btw). However, what about my mother-in-law, the woo-woo queen of all time? What about my sister-in-law, the “There is no objective reality” liberal arts graduate? What about my father, the conservative, Catholic, retired from the business world philanthropist who feels there it not enough God in the classroom? — All of who have almost no concept of what science is or how it works beyond what they see in the movies and on TV. How do you reach them? What would you like to see them do to participate?

These are really good questions. So, I’m going to try to give some answers.

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The consequences of a chilly climate in the academic workplace.

After my post yesterday suggesting that women scientists may still have a harder time being accepted in academic research settings than their male counterparts, Greensmile brought my attention to a story in today’s Boston Globe. It seems that almost a dozen professors at MIT believe they lost a prospective hire due to intimidation of the job candidate by another professor who happens also to be a Nobel laureate. Possibly it matters that the professor alleged to have intimidated the job candidate is male, and that the job candidate and the 11 professors who have written the letter of complaint are female; I’m happy enough to start with a discussion of the alleged behavior itself before paddling to the deep waters of gender politics.
But first, the story:

MIT star accused by 11 colleagues
Prospective hire was intimidated, they say

By Marcella Bombardieri and Gareth Cook, Globe Staff | July 15, 2006
Eleven MIT professors have accused a powerful colleague, a Nobel laureate, of interfering with the university’s efforts to hire a rising female star in neuroscience.
The professors, in a letter to MIT’s president, Susan Hockfield , accuse professor Susumu Tonegawa of intimidating Alla Karpova , “a brilliant young scientist,” saying that he would not mentor, interact, or collaborate with her if she took the job and that members of his research group would not work with her.
The Massachusetts Institute of Technology, they wrote in their June 30 letter, “allowed a senior faculty member with great power and financial resources to behave in an uncivil, uncollegial, and possibly unethical manner toward a talented young scientist who deserves to be welcomed at MIT.” They also wrote that because of Tonegawa’s opposition, several other senior faculty members cautioned Karpova not to come to MIT.
She has since declined the job offer.

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Boredom, sensationalism, and toxic idiocy: Is there any good way to talk about science with non-scientists?

Amanda Marcotte at Pandagon put up a post about gender essentialism that starts by citing this post at Mixing Memory on how people’s representations of homosexuality affect their attitudes toward homosexuality. Because Chris’s post cited my two posts (initially sparked by Jessica’s post at Feministing), I came in for some criticism from Greensmile in this comment at Pandagon. As I believed these criticisms to be based on a misunderstanding of my position, I responded. Greensmile then was kind enough to read my posts and to respond that we seem to be having “the most violent agreement”, given that Greensmile has also mused on the the science on sexual orientation (in two thoughtful and detailed posts that you really should read) and has come to substantially the same conclusion I have, that “how we treat gays should not depend on what science eventually understands about that collection of behavior paterns”.
Can I tell you, before we go any further, that I really like how these new technologies make it possible for us to track down what other people are actually saying in order that we may discover where we are in agreement? When people gnash their teeth and say that cyberspace is hosting the world’s largest shouting match, this is just the sort of counter-example I like to have handy.
Anyhow, I do think there is one smallish point of disagreement between me and Greensmile that ought to be noted. But then, I want to turn my attention to a larger issue Greensmile raises in another comment at Pandagon:

Research is not conducted in public. And in fact, publicly funded research can be jeopardized by dimwitted popular misconceptions about the subject of the research…ultimately to the disservice of all. So discussion of research in public may be a matter where discretion is advised. Chris commented that to do otherwise is naive. That may be so. But as this little tempest of unrecognized agreeing has demonstrated, discussion travels far and fast nowdays. So I stick by my guns: scientists and people who follow and defend that way of knowing the world are going to have to deal with toxic idiocy anyway, lets just get good at it as well as, or instead of, trying to avoid it. As I commented back to Chris:
“naive”: Thats me all right. But I do not go back and forth much: dissemination of ideas is virtually impossible to control in this day and age…unless you can make it sound boring [which was Jessica Vallenti’s original faux pas: she sensationalized a routine scientific paper] If senationalism and instant dissemination are here to stay, then we just have to keep learning and calmly explaining what we have learned…and calmly refuting from our facts the distortions others reach from their assumptions and fears.

To boil down the larger issue to a question: What is the best way for scientists (and others) to talk about scientific ideas and findings with non-scientists?

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The “magical thinking” brain parade.

This is going to look like I’m tooting my own horn again, but actually I’m tooting for Concerned Scientist Daniel Rhoads on this one. Meme Therapy has another installment in their “brain parade” series. In this one, they ask:

We’re seeing renewed attacks on evolution, certain branches of scientitic research and conspiracy theories involving climatologists and Global Warming. At the same time supernatural thinking (new age, crystals, ID, deified interpretations of the Gaia hypothesis) are thriving. Should we be concerned by the level of magical thinking in our society? And if so what, if anything can be done about it?

In addition to answers from Daniel and yours truly, you’ll find answers from authors Tim Pratt, Sean Williams and Jason Stoddard.

The duties that come with knowledge and uncertainty.

While I hope this hurricane season is a lot less eventful than the last one, it’s always good to be ready. To that end, I’m brushing off (and bringing together here) two “classic” posts from the 2005 hurricane season.
As we look to the scientists to tell us what nature may have in store for us, we need to remember how scientists think about uncertainties — and especially, how important it is to a scientist to avoid going with predictions that have a decent chance of being false. Being wrong may seem almost as bad to the scientist as being under 10 feet of water.
Meanwhile, the scientists need to remember that non-scientists ask the scientists for predictions so they can act on these predictions to make prudent decisions. (Except, of course, in the cases where the people who control the resources find it convenient to ignore the relevant scientific information.)

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Watch what you say about my university!

The problem with having eyes and ears everywhere is that sometimes they deliver sensory data that make you want to rip them out of your head or stuff them with cotton, respectively.
An eagle-eyed reader pointed me toward some eyebrow-raising comments on another blog, which would not be of much interest except they purport to transmit information obtained from one of the fine science departments at my university. So, to uphold the honor of my university, I have to wade into this.
First, a representative sampling of the comments from the poster in question. He writes:

I will leave this site with a comment a chemistry professor made. It is simple but for this site it will speak volumes. Can 2 parrots mate and have a crow.
This is the premise of evolution, like it or not. This is it.

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If private firms fund research at universities, who do you think will control access to the knowledge?

Just one more follow up on the matter of how research universities will make do as federal funds for research dry up. Some have suggested that the answer will come from more collaboration between university labs and researchers in private industry.
Perhaps it will. But, a recent article in the Boston Globe about conflicts within the Broad Institute is suggestive of the kinds of clashes of philosophy that might make university-industry collaborations challenging. From the article:

Just over a year ago, Cambridge’s prestigious Broad Institute started an idealistic medical-research project, fueled by millions of dollars from drug companies, to create powerful new molecules and make them cheaply available to lab researchers around the world.
Called the RNAi Consortium , the program runs on donations from Novartis AG , Bristol-Myers Squibb Co. , and Eli Lilly & Co. , among others. It has designed a huge collection of molecules to block the workings of each human gene — a new and increasingly important technique for scientists and drug makers. The project embodies the ambitious goals of the three-year-old Broad Institute, which united the czars of top science labs at Harvard University and the Massachusetts Institute of Technology to turn genetic research into real treatments for diseases.
But now the altruistic RNAi project has run into the shoals of commerce. The Broad relies on two for-profit companies to produce and distribute the new molecules to researchers, and one of those companies is suing the other to stop it from sending them out.
Sigma-Aldrich Corp. , a global lab supply company based in St. Louis, filed suit against Open Biosystems Inc. of Alabama, a private firm specializing in supplying genetic material, charging that it infringes two key scientific patents.
Although the Broad Institute invents the RNAi molecules, it can’t produce them in the volume needed for research experiments. So it has licensed the two suppliers to keep a ready stock of Broad-invented material in their warehouse freezers to sell to customers. The companies make a profit, but because the Broad Institute absorbs the high cost of the original research, they can keep prices down for their customers.
If the lawsuit succeeds in shutting down Open Biosystems, it would give Sigma an effective monopoly, leading scientists to worry that a resource built with philanthropic money and intended for public access would become unaffordable.
“Our goal is easy access to the world research community,” said David Root , the Broad Institute scientist who manages the RNAi Consortium. “We went to two distributors with the idea of trying to make sure it’s widely available.”

(Bold emphasis added.)

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Federal money comes with strings.

Yesterday I blogged a bit about how the rollback of NIH research funding may impact scientists at research universities. In light of those comments, here’s another news item worth your attention.
The Boston Globe reports that Yale University may be in some amount of trouble for accepting lots of federal research funds but then not accounting for its use in ways that satisfied the funders:

Federal authorities are investigating how Yale accounts for millions of dollars in government research grants, school officials said Monday.
Yale received three subpoenas last week from the U.S. Department of Health and Human Services, Defense Department and National Science Foundation seeking grant documents dating back as much as 10 years.
Authorities also have been interviewing university employees about accounting issues.
The school has acknowledged problems with its accounting procedures. In an e-mail to faculty and staff on Friday, Yale President Richard Levin urged employees to cooperate with investigators.
“Regardless of the outcome of the current investigation, we must get all our processes right and make sure that we are good stewards of the funds entrusted to us by the federal government,” Levin said in a statement released Monday. “We know that we have more work to do.”

This sounds like tons of fun for the Yale faculty and staff. Who doesn’t like taking time out of his or her day to cooperate with federal investigators?

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